CURRENTLY FUNDED RESEARCH BY PAF

 

Hilary Vernon, MD, PhD, Johns Hopkins University

“Targeting Serine and Thiol Metabolism in Propionic Acidemia” – In July 2017, PAF awarded a $43,645 grant.   In the research project, entitled “Targeting Serine and Thiol Metabolism in Propionic Acidemia”, we will define the role of novel pathways of cellular dysfunction in Propionic Acidemia. It has been known for several decades that the genetic cause of Propionic Acidemia is an abnormality in one of the genes encoding for propionyl-CoA carboxylase, leading to accumulation of propionic acid and it’s metabolites. However there is still a limited understanding of how this causes cellular dysfunction.

In our preliminary work, we defined novel differences in the way that cells affected with Propionic Acidemia produce defenses against oxidative stress, and in the way that these cells utilize serine, a central amino acid for cellular growth. In this current research project, we will use a new cell model of propionyl-CoA carboxylase deficiency developed in our laboratory to fully define these pathway differences, and how they alter the response to stress. We hope that in defining these new pathways of cellular dysfunction in Propionic Acidemia, we will offer new areas for potential therapeutic intervention and therapeutic monitoring. We are excited to begin this research, and are grateful to the Propionic Acidemia Foundation for funding this research.

Nicola Brunetti-Pierri, MD, Fondazione Telethon, Italy

“Novel Therapies for Propionic Acidemia” – In June 2017, PAF awarded a $50,000 grant. Propionic acidemia (PA) is an inborn error of metabolism caused by deficiency of propionyl-CoA carboxylase (PCC). There is no cure for PA and available therapies are often unsatisfactory. Elective liver transplantation is being increasingly used to reduce metabolic crises and temper some of the most severe symptoms of the disease. However, liver transplantation is invasive, has high morbidity, and requires long-term immunosuppression. Therefore, more effective and safer therapies for PA are highly needed. We generated a PA model in the medaka fish (Oryzias latipes) that recapitulate the pathological and biochemical abnormalities observed in human patients, and has reduced locomotor activity and survival. As disease model, the fish has several advantages including easy handling, low costs, large number of progeny per generation, a relatively short generation time, and a small and well-draft genome. We propose to perform a high-throughput drug screening in this animal model using the reliable and clinically relevant endpoint of locomotor activity as first-tier read-out. Positive hits will be confirmed for their effect on biochemical abnormalities and survival.

Jan P. Kraus, Ph.D.  University of Colorado at Denver and Health Sciences Center, (UCDHSC) Denver, Colorado.

“Enzyme Replacement Therapy for Propionic Acidemia” –  In August 2011, PAF awarded a $32,000 grant.  A continuation grant for $28,898 was awarded for January 1, 2013- December 31, 2015.   The main objective of this project is to develop a therapeutic treatment of PA by enzyme replacement therapy.  Study still in progress.

Andrea Gropman, M.D., FAAP, FACMG, FAAN Children’s National Medical Center,  Washington, D.C.

“Biomarkers for Neurological Injury in PA” – In January 2012, PAF awarded a $27,000 grant.  Recruitment Flyer   Study is still recruiting.

PREVIOUSLY FUNDED RESEARCH BY PAF

Loren Pena, M.D., PhD. Duke University

PAF awards a $21,200 Grant to Dr. Loren Pena on her study titled:  “A prospective study of biochemical parameters reflective of metabolic control in propionic acidemia”  in January 2013.    In March, 2014 PAF awarded a $28,697 grant.  In February, 2015  PAF awarded an additional $18,159 grant for year 3 of the study.  Study completed February 2017.

 

Michael A. Barry, Ph.D, Mayo Clinic College of Medicine

PAF awards $39,572 Grant to Dr. Barry for his study titled:  “Neurologic Phenotypes and Therapy in Propionic Acidemia Mice.” Fall Newsletter update on Dr. Barry’s research  See below for more articles and information on past research by Dr. Barry

Kimberly Chapman, M.D. Ph.D and Kristina Cusmano-Ozog, M.D., Children’s National Medical Center, Washington, D.C.

“Is there energy deficiency in Propionic Acidemia”.  In January 2012, PAF awarded a $15,500 grant.

Gene expression in cell lines from propionic acidemia patients, carrier parents, and controls.

Marisa Cotrina, Ph.D. University of Rochester, Rochester, NY
“The impact of pa on brain astrocytes: an in vitro model to test mitochondrial therapy in PA”   In January 2012, PAF awarded a $27,000 grant.  In March 2013, PAF awarded a $27,000 continuation grant.

Holmes Morton, MD. Clinic for Special Children, Strasburg, PA“The Biochemical Basis fo Keto-Acidemia, Encephalopathy, Metabolic Strokes, Heart Failure & Long QTc, and a Discussion of Current Therapies” -In September 2012, PAF awarded a $5000 grant for the workshop held on September 14, 2012.

Jan P. Kraus, Ph.D.  University of Colorado at Denver and Health Sciences Center,(UCDHSC) Denver, Colorado.”Genotype-phenotype correlations in Propionic Acidemia” – In July 2008, PAF awarded Dr. Kraus a $40,000 grant.   In July 2009, PAF awarded a continuation grant of 40,000.  In October, 2010, PAF awarded a continuation grant of $28,000.

Research Studies in PA – Dr. Kraus Update – 11/2011

Mutation analysis in 54 propionic acidemia patients. 2011 Oct 27

“Crystallization and structure determination of human propionyl-CoA carboxylase”   – In March 2008, PAF awarded Dr. Kraus a $30,000 grant. In May 2009, PAF awarded Dr. Kraus an extension grant of $30,000 to continue his study. In May 2010, PAF awarded Dr. Kraus an extension grant of $30,000.

“This project deals with the three dimensional structure of the enzyme using crystallization and X-ray diffraction.  Why is this important?  Solving the structure of the enzyme is essential for at least two reasons:  first, the structure would allow prediction of the impact of each mutation on the function onf the enzyme; second, any meaningful design of treatment drugs should be based on the enzyme’s structure.  We are working on this project in collaboration with Dr. Vivien Yee who is an expert crystallographer and is based at the Case Western University in Cincinnati.” – update Dr. Kraus 10/2010

Michael Barry, PhD, Mayo Clinic Rochester

“Feasibility of translating gene therapy for propionyl CoA carboxylase (PCCA) deficiency”

In September 2009, PAF awarded Dr. Barry a $20,000 grant to which begins a new chapter in designing an adenoviral gene therapy for PA to be used in clinical trials in the future.  Dr. Barry’s project will include expanding the number and types of PA mice for use in the adenoviral (Ad5) therapy. Specifically he will be generating new transgenic mice bearing patient PCCA mutations to compare to the PA mouse model previously designed by Dr. Miyazaki.  One goal will be to extend the lifespan of the new PCCA mutant mice.  A second goal will be to determine how much genetic correction will be needed to do this.  The amount of PCC activity necessary for extending the lifespan and reducing symptoms of PA in mice is currently unknown, so this will be determined from both human and mouse cell lines as well as analyzing whole mice.  Dr. Kraus at The University of Colorado School of Medicine will participate in the PCC analysis of the cell lines.

Kimberly Chapman, MD, Ph.D., Children’s Hospital of Philadelphia.

“Gene Expression Profiles of Patients with Propionic Acidemia and their Carrier Parents”

In May 2009, PAF Awarded Dr. Chapman a $29,381 grant to study how the blockage of PCC (propionyl CoA carboxylase, the enzyme that is missing or deficient in PA patients), affects other genes in the body.  Dr. Chapman’s study is unique in that she will be looking at how a single gene malfunction like mutated PCCA or PCCB may influence other genes across the entire human genome to malfunction.  Hers is the first research project that will take advantage of the newly formed PA Cell and DNA Repository at Coriell Institute for Medical Research.  Dr. Chapman will use patient samples obtained from Coriell to compare RNA expression levels of PA patients and also their carrier parents.  The data she generates may shed new light on why certain secondary complications are prone to develop in PA’s, and will hopefully improve our understanding of how the whole body reacts when PCC is not functioning properly.  The results showed that over 300 of these genes respond differently to low glucose in individuals with PA than in individuals without PA. This is the first study of its kind to look at a clinical significance for PA carrier parents.

Jan P. Kraus, Ph.D.  University of Colorado at Denver and Health Sciences Center,(UCDHSC) Aurora, Colorado.   Grant 3/1/2006- 2/29/2008

“Therapeutic Approaches to Propionic Acidemia”

In 2006, PAF awarded Dr. Kraus a grant for $25,000 for his studies with chaperone proteins.  An additional $30,000 was awarded in 2007.  The enzyme propionyl-CoA carboxylase (PCC) is deficient in pathogenic cases of propionic acidemia.  PCC is constructed from alpha and beta subunits encoded by the genes PCCA and PCCB respectively.  To produce a functional enzyme the subunits must be assembled and folded into the correct conformation inside the body.   Some mutant forms of PCC tend to aggregate or fold incorrectly resulting in inactive enzymes in some PA patients. Previous work has shown that when some misfolded mutant PCCs are expressed in the presence of the molecular chaperone proteins GroES and GroEL significant levels of PCC activity are produced.  Treatment of this class of PCC mutants with chemical chaperones also restored PCC activity.  This indicates that in a subclass of PCC mutations, the defect lies in the impaired folding or assembly of the enzyme rather than in its production.  Dr. Kraus is currently treating specific PCC mutants in E. coli and in fibroblasts with molecular and chemical chaperones to identify mutants that may respond in vivo.  If increased production of PCC is demonstrated, this work has the potential to open the doors to a new treatment strategy for some PA patients.

Jon Wolff, University of Wisconsin Madison, Wisconsin

“Muscle directed gene therapy for Propionic Acidemia”

In 2007, PAF awarded Dr. Wolff a $30,000 grant.   More information is available in the April 2007 newsletter.  July 2008 Update

Dr. Michael Barry, Ph.D. Mayo Clinic, Rochester, MN

“Gene Therapy for Propionyl CoA Carboxylase Deficiency”

Preclinical studies by Dr. Miyazaki and liver transplantation in PA patients suggest that correction of the defective genes of PCC in the liver can temper some of the metabolic problems due to the disease.  Based on this, Dr. Michael Barry is testing the feasibility of performing liver-directed gene therapy using adenoviral and adeno-associated virus gene delivery vectors using PA mice constructed by Dr. Miyazaki.  Work is underway to determine if these liver-directed approaches can mitigate the metabolic defects in the mice and how long the genetic correction will last.  While at Baylor College of Medicine, Dr. Barry’s project was funded $58,489.04.    (2004-2006)  An additional $25,000 was awarded to Dr. Barry for 1/1/2007-12/31/2007 to continue his studies at Mayo Clinic.

OTHER CLINICAL PROJECTS WHERE INDIVIDUALS WITH PA CAN PARTICIPATE

Natural History, Physiology, Microbiome and Biochemistry Studies of Propionic Acidemia

This study will evaluate patients with propionic acidemia to learn more about the genetic and biochemical causes and the medical complications associated with it.  They also plan to study how bacteria living in our gut (microbiome) can affect the course of propionic acidemia.   Study information.

NIH MINI Study

The NIH MINI Study: Metabolism Infection and Immunity in Inborn Errors of Metabolism  is a study at the NIH Clinical Center. The main goal of the study is to learn about the function of the immune system in metabolic disorders, especially OAs.   MINI Flyer 2016v2

Using cord blood to humanize mice to study immune function in inborn errors of metabolism (IEM)

Carbaglu Study

N-carbamylglutamate  (Carbaglu) In The Treatment of Hyperammonemia  study is looking at if N-carbamylglutamate will  enhance the ability of the liver to dispose of toxic ammonia which accumulates in several metabolic diseases including urea cycle disorders and organic acid disorders like propionic acidemia.

Participating locations

  • Children’s Hospital of Boston
  • Rainbow Babies and Children’s Hospital of Cleveland
  • Children’s Hospital Colorado
  • University of California Los Angeles
  • Mount Sinai Children’s Hospital, New York
  • Children’s Hospital of Philadelphia
  • Children’s Hospital of Pittsburgh
  • Lucille Packard Children’s Hospital of Stanford University
  • Children’s National, Washington DC

 

Previous Projects

Survey of health status and complications among propionic acidemia patients registered with the Propionic Acidemia Foundation

PA Survey Poster at NUCDF Satellite Symposium – August 2009

Survey of health status and complications among propionic acidemia patients.

Am J Med Genet A 2012 Jul; 158A(7); 1641-6

Dr. Nicola Longo, University of Utah

Anaplerotic Therapy in Propionic Acidemia – The objective of this project is to define whether nutritional supplements (ornithine alphaketoglutarate, glutamine, or citrate) capable of filling-up the citric acid cycle (anaplerotic therapy) can improve hyperammonemia, glutamine levels, and outcome in patients with propionic acidemia.  You can read more in the Spring 2008 newsletter on the Sites of Interest Page.